BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018F12SP1|AL427363
(833 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1102 0.0
>3x_Contig1802
Length = 45229
Score = 1102 bits (546), Expect = 0.0
Identities = 627/655 (95%), Gaps = 9/655 (1%)
Strand = Plus / Plus
Query: 1 gatctctattaatctagattcgtccggcctgataatagataaaaggaatcactatcaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4335 gatctctattaatctagattcgtccggcctgataatagataaaaggaatcactatcaaac 4394
Query: 61 aggtttcctgtttgtaccggctatctgtatcttcaaaactattyaatttttccagttcgt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4395 aggtttcctgtttgtaccggctatctgtatcttcaaaactattcaatttttccagttcgt 4454
Query: 121 gttaccagcrattagtgatcaawaatccggattcatgaaacgaatccgaaccttgcagtt 180
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4455 gttaccagcaattagtgatcaaaaatccggattcatgaaacgaatccgaaccttgcagtt 4514
Query: 181 tgggccgtgaaactatgttacgcatacaaacagtcaagaattcawatgataaattataaa 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4515 tgggc-gtgaaactatgttacgcatacaaacagtcaagaattcaaatgataaattataaa 4573
Query: 241 cmaattcaaaaccttactttgagacacttwtrawctttttttwtatgatacataactatg 300
| ||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct: 4574 caaattcaaaaccttactttgagacacttataaactttttttatatgatacataactatg 4633
Query: 301 ctcataartttgtctggctctctatcaaccattggcacttattttctataatagatgtag 360
||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 4634 ctcataaatttgtctggctctcta-caaccaatggcacttattttctataatagatgtag 4692
Query: 361 gatwtwtctatcgctttctmcctttatagctaagawatctacacattcmttgttgtcacc 420
||| | ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4693 gatatatctatcgctttctacctttatagctaagaaatctacacattcattgttgtcacc 4752
Query: 421 gtcgccgacgctgtcgtttgtcaggraaagtcatgtgatcacaaaatcactactgaaact 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4753 gtcgccgacgctgtcgtttgtcaggaaaagtcatgtgatcacaaaatcactactgaaact 4812
Query: 481 gtagagcattccgaaaagwtcaggaagagtgcttgtgccataacacccgtgcccctcaat 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4813 gtagagcattccgaaaagatcaggaagagtgcttgtgccataacacccgtgcccctcaat 4872
Query: 541 ctatgctttcagcgctgtggctaaagaaaaagaaatattattacccggactcgttaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 4873 ctatgctttcagcgctgtggctaaagaaaaagaaatattattacccggact-gtta--aa 4929
Query: 601 gtgtcggaagatgcgcttcgagatgaattctcttttaggtctattgcgaaaaaaa 655
|||||||||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 4930 gtgtcggaagatgc-cttcgagatgaatt-tctttt-ggtcta-tgcgaaaaaaa 4980
Score = 139 bits (69), Expect = 7e-33
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 753 cagtcgmtggtbaaacctcgggatttcagttgtgttatgccacttctaatgtaccamaaa 812
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5062 cagtcgatggt-aaacctcgggatttcagttgtgttatgccacttctaatgtaccaaaaa 5120
Query: 813 tttcctgtttggtttcttcag 833
|||||||||||||||||||||
Sbjct: 5121 tttcctgtttggtttcttcag 5141
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4998
Number of Sequences: 1807
Number of extensions: 4998
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 833
length of database: 10,358,551
effective HSP length: 16
effective length of query: 817
effective length of database: 10,329,639
effective search space: 8439315063
effective search space used: 8439315063
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.4 bits)